YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91186713, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTQIVLG AAVGELVLGR KVGNKAMIYG AVAGTIPDLD VFIGNFYDTV TALEIHRGFS  60
   61 HSIVFSVLMA PVLGYLLSRI HKQASWKNWS SLVFLGLFTH PLLDCFTTWG TQLFWPLDLR 120
  121 IAFKSIFVID PLYTLPFLIC LIAASRCQRT SVKRRRLNRL GLILSSSYLI LSLVSKGFAF 180
  181 DKFENALAAQ NITYSELETR PSPLNILLWS ANIKTSTAFL IGEYSIFDSQ PIQFRVYPKQ 240
  241 HEKIEGLLKY ENLERLTNIT KGWFIISERE NELYLNDLRF GLVSLDPASE KFVFSYNLSE 300
  301 VDNELIITEE PKNREDVKAL FSELWTRIKG N

Type	Start	End	Confidence
Cytoplasmic	1	25	0.77
Transmembrane Helix	26	44	0.72
Non-Cytoplasmic	45	57	0.79
Transmembrane Helix	58	77	0.93
Cytoplasmic	78	88	0.80
Transmembrane Helix	89	110	0.86
Non-Cytoplasmic	111	125	0.75
Transmembrane Helix	126	145	0.90
Cytoplasmic	146	159	0.82
Transmembrane Helix	160	180	0.80
Non-Cytoplasmic	181	331	0.80