YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255005140
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.97
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	323	0.99
Transmembrane Helix	324	345	0.86
Cytoplasmic	346	354	0.89
Transmembrane Helix	355	377	0.91
Non-Cytoplasmic	378	389	0.87
Transmembrane Helix	390	410	0.91
Cytoplasmic	411	428	0.87
Transmembrane Helix	429	448	0.92
Non-Cytoplasmic	449	468	0.87
Transmembrane Helix	469	490	0.94
Cytoplasmic	491	496	0.90
Transmembrane Helix	497	519	0.89
Non-Cytoplasmic	520	549	0.91
Transmembrane Helix	550	568	0.93
Cytoplasmic	569	570	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHYLTKFVA MLITAAMVCS FGLLKSQAAE QQSISDVYSV ITDAKSALSN NSISNDNKQK  60
   61 AIEQVVSAVK KLSLEDNSEG NAVKSDVRKL EDAKANDNQK DTLSQLTKSL IAYEEKLASK 120
  121 DAGSKIKLLQ QQVDAKDAAM TKAIKDKNKA ELESLNNSLN QIWTSNETVI RNYDANQYGQ 180
  181 IEVALLQLRI AIHKSPLDTA KVSHAWTTFK SNIDHVDKKS DTSANDQYHV SQLNDALEKA 240
  241 IKAIDDNQLS DADAALTHFI EIWPYVEGQI QTKDGALYTK IEDKIPYYQS VLDEHNKSHV 300
  301 KDGLVDINNQ IKEVVGHSYS FVDVMIIFLR EGLEVLLIVM TLTTMTRKVK DNKGTASVIG 360
  361 GAIAGLVLSI ILAITFVETL GNSGILRESM EAGLGIVAVI LMFIVGVWMH KRSNAKRWND 420
  421 MIKNMYANAI SNGNLVLLAT IGLISVLREG VEVIIFYMGM IGELATKDFI IGIALAIVIL 480
  481 IVFAVLFRFI VRLIPIFYIF RVLSIFIFIM GFKMLGVSIQ KLQLLGAMPR HVIEGFPTIN 540
  541 WLGFYPSYEP LIAQAAYIMV VAILIFKFKK