YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90431648, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.86
Transmembrane Helix	43	66	0.86
Non-Cytoplasmic	67	106	0.83
Transmembrane Helix	107	131	0.87
Cytoplasmic	132	167	0.93
Transmembrane Helix	168	192	0.87
Non-Cytoplasmic	193	212	0.90
Transmembrane Helix	213	233	0.96
Cytoplasmic	234	251	0.89
Transmembrane Helix	252	275	0.88
Non-Cytoplasmic	276	317	0.92
Transmembrane Helix	318	336	0.92
Cytoplasmic	337	345	0.85
Transmembrane Helix	346	364	0.94
Non-Cytoplasmic	365	370	0.74
Transmembrane Helix	371	392	0.81
Cytoplasmic	393	394	0.62
Transmembrane Helix	395	417	0.73
Non-Cytoplasmic	418	422	0.67
Transmembrane Helix	423	442	0.95
Cytoplasmic	443	719	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQPYYENS LVCSCLLFLY MEAEIEIGDV YMFKKLFGQL QRIGKALMLP VAILPAAGIL  60
   61 LAFGNAMHNE QLVEIAPWLK NDIIVMISSV MEAAGQVVFD NLPLLFAVGT ALGLAGGDGV 120
  121 AALAALVGYL IMNATMGKVL HITIDDIFSY AKGAKELSQA AKEPAHALVL GIPTLQTGVF 180
  181 GGIIMGALAA WCYNKFYNIT LPPFLGFFAG KRFVPIVTSV VAIATGVLLS FAWPPIQDGL 240
  241 NSLSNFLLNK NLTLTTFIFG IIERSLIPFG LHHIFYSPFW FEFGSYTNHA GELVRGDQRI 300
  301 WMAQLKDGVP FTAGAFTTGK YPFMMFGLPA AAFAIYKNAR PERKKVVGGL MLSAGLTAFL 360
  361 TGITEPLEFS FLFVAPVLYG IHVLLAGTSF LVMHLLGVKI GMTFSGGFID YILYGLLNWD 420
  421 RSHALLVIPV GIVYAIVYYF LFDFAIRKFK LKTPGREDEE TEIRNSSVAK LPFDVLDAMG 480
  481 GKENIKHLDA CITRLRVEVV DKSKVDVAGI KALGASGVLE VGNNMQAIFG PKSDQIKHDM 540
  541 AKIMSGEITK PSETTVTEEM SDEPVHVEAL GTTDIYAPGV GQIIPLSEVP DQVFAGKMMG 600
  601 DGIGFIPEKG EIVAPFDGTV KTIFPTKHAI GLESESGVEV LIHIGIDTVK LNGEGFESLI 660
  661 NVDEKVTQGQ PLMKVNLAYL KAHAPSIVTP MIITNLENKE LVIEDVQDAD PGKLIMTVK