YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90437564, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAFYIPTV NFMGAGCLTQ AADAIKSHGF KKALIVTDKV LNQIGVVTQV AVLLTERDID  60
   61 SVVYDGTQPN PTIKNVDEGL ALLKENQCDF VISLGGGSPH DCAKGIALLA ANGGHIGDYE 120
  121 GVDRSAKAQL PVVAINTTAG TASEMTRFCI ITDEERHIKM AIVDKNTTPL ISVNDPQLML 180
  181 AKPASLTAAT GMDALTHAIE AYVSTAATPI TDAVAIKAIE LIQQNLRTAV KDGQNLNARE 240
  241 QMAYAQFMAG MAFNNASLGY VHAMAHQLGG YYNLPHGVCN AVLLPHVQRY NAQVSAERLR 300
  301 DVAKAMGVDV EGMTAEQGAN AALEAIVALS KDVGIPLGLK ELGVKEEDIA LLADNALKDA 360
  361 CGFTNPKQAT HEEISQIFMA AM

Type	Start	End	Confidence
Signal Peptide	1	21	0.61
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	382	0.97