YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90437694, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIILGAGQ VGGTLAENLV GENNDITIVD KDPERLRELQ DKYDLRVVQG FASHPRTLRE  60
   61 AGAQDADMLV SVTNSDETNM IACQIAFSLF NTPNRVARIR SPEYLREKEQ LFQSDAVPVD 120
  121 HLIAPEELVT DYIEKLIEYP GALQVVSFAE EKVGLVAVKA YYGGPLVGNA LSALREHMPH 180
  181 IDTRVAAIFR QGKPIRPQGT TIIEADDEVF FVAASNHIRS VMSELQRLEK PYKRLMIVGG 240
  241 GNVGAGLARR LEQSYSIKLI ERNQERAENL SEMLQNTIVF CGDASDQELL SEEHIEQIDV 300
  301 FIAVTNDDEA NIMSAMLAKR MGAKKVMVLI QRGAYVDLVQ GGTIDIAISP QQATISALLT 360
  361 HVRKADIVNV SSLRRGAAEA IEAIAHGDSS TSKVVGRAIS DIKLPPGTTI GAVVRGEEVL 420
  421 IAHDRTVIEQ NDHVVMFLVD KKYIPDVERL FQPSPFFL

Type	Start	End	Confidence
Signal Peptide	1	16	0.56
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	458	0.99