YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90580257, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	32	0.90
Non-Cytoplasmic	33	50	0.92
Transmembrane Helix	51	74	0.89
Cytoplasmic	75	85	0.86
Transmembrane Helix	86	106	0.92
Non-Cytoplasmic	107	135	0.91
Transmembrane Helix	136	157	0.89
Cytoplasmic	158	190	0.93
Transmembrane Helix	191	214	0.81
Non-Cytoplasmic	215	236	0.87
Transmembrane Helix	237	256	0.95
Cytoplasmic	257	287	0.97
Transmembrane Helix	288	311	0.90
Non-Cytoplasmic	312	330	0.90
Transmembrane Helix	331	352	0.93
Cytoplasmic	353	368	0.89
Transmembrane Helix	369	390	0.90
Non-Cytoplasmic	391	406	0.88
Transmembrane Helix	407	428	0.90
Cytoplasmic	429	465	0.94
Transmembrane Helix	466	483	0.85
Non-Cytoplasmic	484	514	0.82
Transmembrane Helix	515	534	0.97
Cytoplasmic	535	542	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKFLFWKA GSWTFALLLV FPILAIFFTA MGNSDEVFGH LMNTVMPTYA FNTVALVVGT  60
   61 VLLSLCFGLP TAWLMAMCRL PTEKTLQWAL VLPLAMPGYI VGYLYTNWFD YAGPIQIFLR 120
  121 SMFGWQHVGD YWFPDLRSLG GACFVLALVL YPYIYLLVRA AFMEQSVSLL QSARLLRCTP 180
  181 WESFRRISLP LARPAIAVGV SLVAMEALGD FGTVSYFAVN TLTTAVYDTW LGYSNLYAAA 240
  241 KISAIMLLVI FFLISSERFS RRKQKMFQHQ CDNDGDVKYN LRGWKKWLAL VWCWGLVGCA 300
  301 FIFPLLQLGY YAVEYFSQSW TPEFKQYSLN SLFVSITAAV IAVILGLVVN FYRRLDGNGF 360
  361 SQMPIRLSSL GYAVPGTVLA IGVMIPLTSA DHLVNDIAMS LGLGRPGLIF SGTIFAIIFA 420
  421 FVVRFAAVAI GSIETSLTKV SPSLDMASKT MGYASTAMLR KVHLPLIRRG CLIAGLLVFI 480
  481 ESMKELNAAL LLRPFNFETL ATYVFNFASD EQLELAALPA ILLVVVGLIP LVLVNRSLEQ 540
  541 KN