YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90438478, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIFGRGPS LQLRLFLAIL LSASLMLADS RLDAFANVRY FLNSAIAPLQ YAANLPRELL  60
   61 DGLNGQMSSH QQLLVENKAL KRDLLVMKSN VLLLDQLQQE NQRLRNLLGS PFVRGERKMI 120
  121 AEVMAVDSDP YSHQVMIDKG RVDGVYEGQP VINDKGIVGQ ISYVGAHNSR VLLLIDPTNA 180
  181 IPVQVVRNDI RVIATGTGKS NEIQLEHVPS STDIRVGDLL VSSGLGGRYP EGYPVARVTE 240
  241 FSFDNKRPFA QIIAKPTVQF DRLRYLLLVW PTDRMKAAET SATKSIAPSS AVSTISPAVA 300
  301 VPANGVKPTA PVENKKPNNE VNNAN

Type	Start	End	Confidence
Signal Peptide	1	30	0.98
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	325	0.99