YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90579939, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYTANLLLD WIANYFWPFT RISSMMMAMT FFGARFVSPK IRLYLALAIT FAVLPVLPKV  60
   61 PQDIELLSLA GFIVTTQQLI IGVAMGLVTQ FITQIFVLLG QILGMQSSLG FASMVDPANG 120
  121 QNTPVLGQFY MFLAILLFLA TDGHLEMLNA VVLSFKTLPI GEAMLQPKDY YQLAGWFGHM 180
  181 FKAGVNMALA GVIALLTVNL SFGVMTRAAP QLNIFSLGFS FALLLGLAIS WFIVLGIVPQ 240
  241 YEAIWQVGLD QVCSLIRIDC

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.75
Transmembrane Helix	15	34	0.89
Cytoplasmic	35	40	0.65
Transmembrane Helix	41	61	0.81
Non-Cytoplasmic	62	78	0.63
Transmembrane Helix	79	105	0.79
Cytoplasmic	106	123	0.64
Transmembrane Helix	124	145	0.83
Non-Cytoplasmic	146	182	0.81
Transmembrane Helix	183	204	0.90
Cytoplasmic	205	213	0.74
Transmembrane Helix	214	235	0.93
Non-Cytoplasmic	236	260	0.82