YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90439228, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.86
Transmembrane Helix	19	42	0.88
Cytoplasmic	43	71	0.84
Transmembrane Helix	72	95	0.80
Non-Cytoplasmic	96	100	0.67
Transmembrane Helix	101	119	0.84
Cytoplasmic	120	151	0.92
Transmembrane Helix	152	175	0.85
Non-Cytoplasmic	176	191	0.82
Transmembrane Helix	192	209	0.95
Cytoplasmic	210	218	0.68
Transmembrane Helix	219	239	0.89
Non-Cytoplasmic	240	252	0.79
Transmembrane Helix	253	276	0.83
Cytoplasmic	277	313	0.90
Transmembrane Helix	314	335	0.92
Non-Cytoplasmic	336	355	0.92
Transmembrane Helix	356	380	0.88
Cytoplasmic	381	393	0.81
Transmembrane Helix	394	413	0.87
Non-Cytoplasmic	414	421	0.57
Transmembrane Helix	422	443	0.83
Cytoplasmic	444	464	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLHDTIFN FLKTFDSLVW GPPLLILLVG TGLYLTIRLG FIQVRYLPLA LRYVFGCKKD  60
   61 ADSKGEGDVS SFAALCTALS ATIGTGNIVG VATAIKLGGP GALFWMWLAA VLGMATKYAE 120
  121 CLLAVKYREV DSNGQILGGP MYYIEKGVGS KWLAKLFALF AVGVACFGIG TFPQANAIVE 180
  181 AAQLSFNVPK EITVVILTVL VATVTLGGIK SISSVASTVV PLMAGFYIIA CISVLASNFD 240
  241 AIPNAISLVI ESAFTGHAAT GGFVGAGIML AIQSGIARGV FSNESGLGSA PIAAAAAQTE 300
  301 SCVRQGLISM TGTFFDTVII CTMTGLTLIV TGAWTSDFAG AAMTTHAFAE GLHSSYYGPL 360
  361 MVSVGLMFFA FTTILGWNYY GERCITYLFG VKAILPYKLF FLVLIAGGAF MQLDMIWVIA 420
  421 DIVNGLMAIP NLIGLVVLRH VVIAETQAFF TKLKQDNSQP ISAL