YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90579248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.77
Transmembrane Helix	20	50	0.77
Non-Cytoplasmic	51	89	0.44
Transmembrane Helix	90	110	0.87
Cytoplasmic	111	123	0.53
Transmembrane Helix	124	144	0.76
Non-Cytoplasmic	145	147	0.53
Transmembrane Helix	148	167	0.83
Cytoplasmic	168	200	0.90
Transmembrane Helix	201	223	0.83
Non-Cytoplasmic	224	240	0.89
Transmembrane Helix	241	263	0.89
Cytoplasmic	264	301	0.93
Transmembrane Helix	302	335	0.78
Non-Cytoplasmic	336	352	0.64
Transmembrane Helix	353	376	0.83
Cytoplasmic	377	391	0.40
Transmembrane Helix	392	411	0.64
Non-Cytoplasmic	412	453	0.77
Transmembrane Helix	454	474	0.84
Cytoplasmic	475	480	0.78
Transmembrane Helix	481	501	0.92
Non-Cytoplasmic	502	528	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISLGNAFI KNFLGKAPDW YKIAIITFLI INPIVFFLID PFVAGWLLVI EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSADQVKHEL VANIEVLLLL VFMVAGIYFM KQLLLFMFTK 120
  121 ILIGIRSKIL LSLAFCVMAA FLSAFLDALT VIAVVISVTV GFYSIYHKVA SGQDPHSNHD 180
  181 HTNDNHVPEL SRDDLENYRA FLRSLLMHAG VGTALGGVMT MVGEPQNLII ADQAGWDFGE 240
  241 FIIRMAPVTV PVFFCGLLTC ALVEKFKICG YGAELPENVR QILVDFDNEE RKSRTSLDYA 300
  301 KLIIQAAIAV WLIIGLAMHL AAVGLIGLTV IILATSFTGI TEEHALGKAF EEALPFTALL 360
  361 AVFFSIVAVI IDQQLFAPII NWVLSLEGSS QLTMFYIANG LLSMVSDNVF VGTVYINEVK 420
  421 TALTNGVINR SQFDMLAVAI NTGTNLPSVA TPNGQAAFLF ALTSAIAPLI RLSYGRMVYM 480
  481 ALPYTIVLAS VGLAGIELML VPMTDWFYTM GWITDASSAA ATIPALAH