YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90578486, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIGLLQALM LGILAFFAGL DLFNGLTHFH RPVVLGPLVG LILGDLQTGI LVGGTLELIW  60
   61 MGLAPLAGAQ PPNVIIGTIV GTAFAITTKV DPNVAVGVAV PFAVAVQMGI TLLFSAMSAV 120
  121 MSKCDEFAQN ADTDGIERVN YLALAVLGSF YFLSAFLPVY LGAEHAGKIV EVLPKDLIDG 180
  181 LGVAGGIMPA IGFAVLMKIM MKNAYIPYFI LGFVAAAWLK LPVLAIAAAA TAMALIDFMR 240
  241 KTETTPVTAP AEDFEDGI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.52
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	33	0.49
Transmembrane Helix	34	60	0.73
Cytoplasmic	61	65	0.38
Transmembrane Helix	66	88	0.76
Non-Cytoplasmic	89	94	0.53
Transmembrane Helix	95	120	0.83
Cytoplasmic	121	138	0.60
Transmembrane Helix	139	162	0.88
Non-Cytoplasmic	163	176	0.60
Transmembrane Helix	177	200	0.85
Cytoplasmic	201	207	0.52
Transmembrane Helix	208	236	0.77
Non-Cytoplasmic	237	258	0.61