YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90578110, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.62
Transmembrane Helix	5	22	0.67
Cytoplasmic	23	28	0.64
Transmembrane Helix	29	48	0.89
Non-Cytoplasmic	49	53	0.79
Transmembrane Helix	54	73	0.90
Cytoplasmic	74	84	0.84
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	112	0.71
Transmembrane Helix	113	133	0.93
Cytoplasmic	134	149	0.85
Transmembrane Helix	150	170	0.91
Non-Cytoplasmic	171	199	0.93
Transmembrane Helix	200	220	0.95
Cytoplasmic	221	231	0.84
Transmembrane Helix	232	252	0.84
Non-Cytoplasmic	253	255	0.50
Transmembrane Helix	256	275	0.75
Cytoplasmic	276	285	0.67
Transmembrane Helix	286	307	0.79
Non-Cytoplasmic	308	313	0.72
Transmembrane Helix	314	336	0.93
Cytoplasmic	337	343	0.84
Transmembrane Helix	344	365	0.91
Non-Cytoplasmic	366	376	0.75
Transmembrane Helix	377	396	0.91
Cytoplasmic	397	646	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGYFLQAFI YLVAAVIAVP LAKRLGLGSV LGYLIAGVVI GPVIGLVGSE TTTIQHFAEF  60
   61 GVVMMLFVVG LELEPKMLWG MRHRLLGLGG LQVVVTALTV MGIAHLFDIA WSYALAIGLI 120
  121 FSLSSTAIVL QTFSEKGLSK TEGGKSAFSV LLFQDIAVIP MLALIPLLAV PELVAKSQAV 180
  181 VAKAAEHHDD LSLVAGLPGW TYAIVIILAI VGVVVGGHYL SRPLFRFVAS SGLREIFTAT 240
  241 ALMLVIGIAA LMSLVGLSPA LGTFLAGVVL ANSEFRHELE SNIEPFKGLL LGLFFITVGA 300
  301 GIDFNVLFDQ FGTVIGLTIG VMLVKFIVLL VLSFIFKVKG SDRWLFALSL AQAGEFGFVL 360
  361 LSYTVQNNVL PESMSQTLSL VVALSMFLTP GLFILYDRVI LPRFCEAKNE READEIDEQG 420
  421 KVIIAGIGRF GQIVNRLLAS NGVKTVVLDH SVTQIDNLRQ INIKSFFGDA TRHDLLHTAG 480
  481 IEDAKLFIVA IDDKERATEL VHYIKQTYPQ VRVLARAYDR GHHYSLRCAG ADYVISETYR 540
  541 SALALGTEAL KNLGVHPFRA EQQKATFVET EARSKEKLYH TWLESTEEDR FNTSYVELFN 600
  601 QLESTLSDVM KQERTDKHTK SERGWTPPPK VFNDEVEQDL VEKHDH