YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90440845, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGVPREVL AHETRVAATP KTVEQILKMG FSVVVEQGAG RLASFDDAAY EAAGATVVST  60
   61 DEVWQSDLIF KVNAPQVNPE TGVDEFELIK EGASLVSFIW PAQNPELLEK LSSKNINIMA 120
  121 MDSVPRISRA QALDALSSMA NIAGYRAVVE AAHEFGRFFT GQITAAGKVP PAKVLVAGAG 180
  181 VAGLAAIGAA GSLGAIVRSF DVRPEVKEQV ESMGAEFLEV DFKEDTSTGD GYAKEMSDEF 240
  241 NKAAERLYAE QAKDVDIIIT TALIPGRPAP KLITKEMVDS MKSGSVIVDL AAANGGNCAY 300
  301 TEADKVVTTP NGVKVIGYTD MVGRLPTQSS QLYGTNLVNL LKLLCKEKDG NIDINFDDEV 360
  361 LRGLTIVKAG ELTWPAPPIK VSAAAQQPKA AVKVEPKVEE PTSPVKKFGL MGAGIALFAW 420
  421 VANYAPAEFL AHFTVFVLAC VVGYYVVWNV SHSLHTPLMS VTNAISGIII VGALLQIGQG 480
  481 NGVVSFLAFI AVLIASINIF GGFTVTKRML EMFRKDK

Type	Start	End	Confidence
Cytoplasmic	1	131	0.66
Transmembrane Helix	132	149	0.44
Non-Cytoplasmic	150	173	0.74
Transmembrane Helix	174	197	0.77
Cytoplasmic	198	404	0.95
Transmembrane Helix	405	422	0.90
Non-Cytoplasmic	423	428	0.77
Transmembrane Helix	429	448	0.95
Cytoplasmic	449	457	0.78
Transmembrane Helix	458	477	0.94
Non-Cytoplasmic	478	484	0.76
Transmembrane Helix	485	505	0.95
Cytoplasmic	506	517	0.92