YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90572875, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFILILQF LTRIPIKLNV GFDDEFYKSI VYFPLVGFVI GILSYLIGWI SMLLFEPFIA  60
   61 SIIITLAGVL ITGGLHIDGL GDTFDAIYSY RDKEKMLEIM KDSRLGTNSL LAIMFVLLLK 120
  121 VGFVYDIISN NSLWIIIFMP MIARLGVMLL TYKTVTPREK GMGNLFIGKL TTSMLITAII 180
  181 YTLLIVALIT KFIFLLPNIV LIKVLGSIIV VFVFIILFKK HIYKKIDGVT GDILGCGIEL 240
  241 SELVYLIYIY LLIFMFFKVK SGDNMIRLIL IRHALTNDNK KGRLSGHINS CISEEGKLQI 300
  301 NKITRYLSNE NIDKVYTTPS TRTKDTVEKI SKLKLLEIEE KEALREISFG DFEGRTFEEI 360
  361 KIKYPNEFEK MIKEGNNYRY PNGESLIDSY KRVAKEIDNI ILENDSNLDT KTILICSHAG 420
  421 TIRNIITHLI SGSYKYHWNF KIDNASITVL EIDGGFAVID KMNFTDFI

Type	Start	End	Confidence
Cytoplasmic	1	29	0.93
Transmembrane Helix	30	50	0.93
Non-Cytoplasmic	51	57	0.69
Transmembrane Helix	58	80	0.87
Cytoplasmic	81	104	0.89
Transmembrane Helix	105	124	0.94
Non-Cytoplasmic	125	132	0.76
Transmembrane Helix	133	152	0.95
Cytoplasmic	153	169	0.75
Transmembrane Helix	170	190	0.89
Non-Cytoplasmic	191	198	0.65
Transmembrane Helix	199	218	0.95
Cytoplasmic	219	232	0.81
Transmembrane Helix	233	254	0.70
Non-Cytoplasmic	255	468	0.81