YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90335568, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPLFQRVA LIGIGLIGSS LAHNIRARKL AGHVAITTRR AATLARAEAL GLGDSYHLDA  60
   61 SDAVRDADLV ILCVPVGSCG AVTKEIAGAL RPGAIVSDVG SVKGAIVQQM QPHLPSHVHF 120
  121 VPAHPIAGTE QSGPDAGFLE LFDNRWCILT PVEGTDEAAV AKLRAFWEAC GSDVEIMTPE 180
  181 HHDLVLAIVS HVPHLIAYNI VGTAADLETV TQSEVVKFSA SGFRDFTRIA ASDPTMWRDV 240
  241 FLTNRDAVLE MLARFSEDLA SLQRAIRWGD GETLFDLFTR TRAIRRGVIE AGQDTAKPDF 300
  301 GRDHSPAPSA PPTQTPED

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	318	0.99