YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90337714, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRRSQIST SGVTFMFRDK PTAYDRLSDA LSDIGERLAE IEERAVETVR PRPTRTERLR  60
   61 RSFDRANPFH SEPTGLARYL PDFATGWSLP STDEARRHAR SLRDSAEHGA HDARGYFDDA 120
  121 RNYLSSVRLP RSIRRSEPER VLDSLRARPE LTGLLVVGGA IAVVGAAYFV TKKVQEHTEE 180
  181 PDYDVVRDDG EIQIRDYDGM VVAETIKSGY HEKARRSGFE TLYDYIAAKS RSGKKIAMTS 240
  241 PVLQQLAEGD GHTKGWAVRF IMPKKYTRAS LPEPTNTGVT LKEVPARRMV SISFSGNFNA 300
  301 TLASKQLMKL YNYLADNNLT QKGDPEYAFY NPPWTPGFMK RNEILIEIMR

Type	Start	End	Confidence
Cytoplasmic	1	150	0.68
Transmembrane Helix	151	170	0.71
Non-Cytoplasmic	171	350	0.94