YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90416895, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.70
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	38	0.91
Transmembrane Helix	39	60	0.90
Cytoplasmic	61	67	0.88
Transmembrane Helix	68	91	0.88
Non-Cytoplasmic	92	126	0.96
Transmembrane Helix	127	147	0.94
Cytoplasmic	148	153	0.89
Transmembrane Helix	154	175	0.90
Non-Cytoplasmic	176	187	0.88
Transmembrane Helix	188	210	0.88
Cytoplasmic	211	222	0.84
Transmembrane Helix	223	242	0.90
Non-Cytoplasmic	243	253	0.72
Transmembrane Helix	254	274	0.91
Cytoplasmic	275	282	0.79
Transmembrane Helix	283	302	0.90
Non-Cytoplasmic	303	308	0.62
Transmembrane Helix	309	327	0.93
Cytoplasmic	328	340	0.89
Transmembrane Helix	341	364	0.87
Non-Cytoplasmic	365	383	0.89
Transmembrane Helix	384	404	0.96
Cytoplasmic	405	436	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRYRQLAA VAFALLAAIF STQVFADELN AANTSWILTS TALVLFMTIP GLSLFYGGLV  60
   61 RSKNVLSVLM QCFAITCLAS IIWFAFGYSL AFGDGGSMNA WIGNLDNILM GNIKEDTMAG 120
  121 DIPESVFALF QMTFAVITPA LIVGAFAERM RFSAMLLFSA LWLVAVYSPI THWVWGGGWL 180
  181 GEMGLLDFAG GTVVHITAGV GALVAALVLG NRKGFPQQAM PPHNLTMTVT GAGMLWVGWF 240
  241 GFNGGSALAA NGDAGMAMLV THISAAAGSL AWMTMEWVKY GKPSVLGIVT GMVAGLGTIT 300
  301 PASGFVGPGG ALVIGLSAGV ICYYATQAIK QRWKIDDSLD VFPVHGVGGI LGTLLAGIFA 360
  361 SDALGVFSGQ GYNEGMNMAS QVQVQIVGIV ATFVYTAIVT FVLLKLVDAM LGLRIDDEDE 420
  421 TMGLDLAEHD ERGYDL