YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90416642\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIENWLVN LTGEQYLWVL ELFVIVVLAL GLGMVINRVV DKLEVQAAKT KTVWDDALIE  60
   61 ACRRPLIWVV WILGVNFAAG IAAQKMDSGL YDLVDPVNRL ALIFLGVMFL TNFISRAERN 120
  121 LVHPDYIAKP MDETTVRAVG KLLRAAVIIT GVLIAMQLFG YSISGLLAFG GIGGIAMGFA 180
  181 AKDLLANFFG GLMIYLDRPF SVGDWVRSPD QEIEGTVEDI GWRLTRIRTF DKRPLYIPNA 240
  241 VFANISVENP SRMTNRRIYE TIGVRYDDLA QMGPIIEQVK AMLLAHPDID TNQTMMVNFN 300
  301 KFAASSLDFF IYVFTKTTNW EAYHQVKQDV LLKVADIIAA NQAEVAFPTS TLHVPDGIQV 360
  361 NAVKDQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.95
Transmembrane Helix	17	40	0.89
Cytoplasmic	41	65	0.92
Transmembrane Helix	66	83	0.94
Non-Cytoplasmic	84	96	0.81
Transmembrane Helix	97	115	0.90
Cytoplasmic	116	139	0.89
Transmembrane Helix	140	161	0.82
Non-Cytoplasmic	162	165	0.57
Transmembrane Helix	166	186	0.80
Cytoplasmic	187	366	0.90