YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90416025\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRFALNRLL QAIPVLLIVI SATFLLVHSA PGGPFSADKA VPPEVIKALE AQYNLDQPLW  60
   61 QQYISYLGDV VQGDFGPSFK YSGRTVNELI AAGIPATAEL ALYAMLVALI IGVSAGVAAA 120
  121 MRPNTLQDYV PMSAAMLGIC MPSFLLGPLL VLVFGIYLEW LPVSGWGDMP GDKIMPAITL 180
  181 GTGYAAYIAR LSRGGMLEVL SQDYIRTARA KGLSEPVIIF KHAMRGGLIP VVAFLGPAFA 240
  241 GLLGGSFVVE TIFQIPGLGR FYVQAAFNRD YTMILGMTIF FATLIILFNL LSDMLAIWLD 300
  301 PKLRQQAREN N

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	30	0.82
Non-Cytoplasmic	31	99	0.96
Transmembrane Helix	100	121	0.92
Cytoplasmic	122	133	0.84
Transmembrane Helix	134	158	0.87
Non-Cytoplasmic	159	173	0.86
Transmembrane Helix	174	191	0.90
Cytoplasmic	192	227	0.90
Transmembrane Helix	228	249	0.90
Non-Cytoplasmic	250	272	0.85
Transmembrane Helix	273	297	0.84
Cytoplasmic	298	311	0.92