YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90332750, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	48	0.74
Transmembrane Helix	49	70	0.96
Cytoplasmic	71	90	0.97
Transmembrane Helix	91	113	0.91
Non-Cytoplasmic	114	117	0.80
Transmembrane Helix	118	138	0.91
Cytoplasmic	139	144	0.91
Transmembrane Helix	145	164	0.93
Non-Cytoplasmic	165	171	0.77
Transmembrane Helix	172	192	0.94
Cytoplasmic	193	213	0.96
Transmembrane Helix	214	235	0.88
Non-Cytoplasmic	236	240	0.70
Transmembrane Helix	241	263	0.89
Cytoplasmic	264	275	0.82
Transmembrane Helix	276	295	0.95
Non-Cytoplasmic	296	301	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQTELETTG VSWRDYLELC KPNVVALMIL TSLIGMLLAT DGLVSLDVLI LGNLGIALCA  60
   61 GSAAAVNHIV DRKIDDTMAR THNRPIARGR IQPSQAIMFA ALTGLAGMVI LLVFINQITA 120
  121 WLTLASSIGY AFVYTMYLKR ATPQNIVIGG LAGAAPPLLG WTAVTGEVHY NALLLVLIIF 180
  181 AWTPPHFWAL AIHRKDDYAK AEIPMLPVTH GEQYTKINIV LYTLLLIVIT VLPFLTGMFG 240
  241 LLYLVGALVL GAGFLYWALV MLFGQDDDSG MKTFKFSITY LMVLFVIMLL DHYLIETTPI 300
  301 I