YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90414544, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	252	0.98
Transmembrane Helix	253	275	0.88
Cytoplasmic	276	280	0.57
Transmembrane Helix	281	299	0.77
Non-Cytoplasmic	300	306	0.64
Transmembrane Helix	307	329	0.91
Cytoplasmic	330	336	0.72
Transmembrane Helix	337	359	0.73
Non-Cytoplasmic	360	392	0.73
Transmembrane Helix	393	410	0.97
Cytoplasmic	411	437	0.74
Transmembrane Helix	438	459	0.89
Non-Cytoplasmic	460	476	0.65
Transmembrane Helix	477	500	0.83
Cytoplasmic	501	507	0.60
Transmembrane Helix	508	526	0.95
Non-Cytoplasmic	527	543	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKSWCVLLR IQALFIASLF AFISLSSWAA QPINSFSDVE SLLSQRNFNE KARAVNWLAE  60
   61 TKYPDTKQIL NYLLAGDIYY HKKQKQLYLI ADYADQQPAI LLSDNKKEII INKKRDYKKV 120
  121 ALNNQLRSAI RHGIAQLDIT SDDSQVRNQA IKSMLGNTDT NIQTLLTDAY SVESDESNKS 180
  181 KLALAIAIGT LNSGNKAEKL AAIDMIGDSI EPAAFRALSN AVSVTEDADI IRVAERGIGS 240
  241 YQQSQRVYST VETLYFGLSL GSVLVLAGIG LAITFGVMGV INMAHGELIM LGAYTTYVMQ 300
  301 QLMPNHIGLS LILSIPAAFF VAGLVGVAIE RGVIRFLYGR PLETLLATFG ISLILQQAVR 360
  361 SVFSPLNRSV ATPDWMSGML EINPMLSLTY NRLYIIFFCF FVFAALVFVL KKTPLGLQVR 420
  421 AVSQNRSMAR SMGVRSEWVD AMTFGLGSGV AGVAGVALSQ LTNVGPNMGQ SYIIDSFMVV 480
  481 VFGGVGNLWG TLVAGLSLGL FNKILEPWAG AVLAKILVLV FIILFIQKRP RGLFPQRGRA 540
  541 VEG