YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90414476, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPLPQAIF LMGPTASGKT DLAIRLREQL PVELISVDSA LIYKGMDIGT AKPDERELSL  60
   61 APHRLIDIRD PAQSYSAGDF RTDALKEMAD IVAEGRIPLL VGGTMLYYKA LLEGLSPLPA 120
  121 SDPDVRAGIE REAQEKGWQF LHEELVRIDP VSGARIHPND PQRLSRALEV FRISGKTLTE 180
  181 LTKTQGEPLP YRVHQFAIAP KDRAVLHQRI EQRFENMIEA GFEEEVRALY QRGDLHPDLP 240
  241 SIRCVGYRQM WDYLGGNCDL DEAVFRGVCA TRQLAKRQIT WLRGWKDLTW LDSNNGDAAL 300
  301 QTVTNSIRCD V

Type	Start	End	Confidence
Signal Peptide	1	18	0.90
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	311	0.99