YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90324885, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKSFFSLG RLLLAVPAGA IATLSFAPYN YWLLAPVSIA LLLWLLQEQT VKRSGLIGFL  60
   61 WGLGLFGTGI SWVHVSIDTF GGMPKIASVF LMSSLISYLA LYPAAFGALF NRFNRGRPFH 120
  121 QLMLSGPVIW LLLDWVRGWA LTGFPWLWMG YGQIDSPLAS LAPILGVEGI TLALVLMSGA 180
  181 LVASVVYRNW KPLMVPMIIM TLTWAASTVS WVVPDPTKNL DVALIQGNVP QELKWLPSER 240
  241 WPTLMKYTDL TRENWDADII VWPEAAIPAL EAHLPTFLQN LDSAARNNNS TVITGVLDQK 300
  301 EDGQYFNNIL TLGKNADGPY QYDKATRYSK HHLLPFGEFV PFGDLLRPIA PFFNLPMSSF 360
  361 SRGDLVQPNL EANGYSIAPA LCYEVAFSEQ VRKNVNIDTE LLLTLSNDAW FGTSIGPFQH 420
  421 MEIAQMRALE LGKPLIRSTN TGITAVVDYT GQITEQIPQF ETAVLRATIT PTEGLTPYTT 480
  481 LGSWPLYFYS LWSLTLSMIL IRRRSGRFRD TRPVETE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	26	0.88
Non-Cytoplasmic	27	30	0.72
Transmembrane Helix	31	46	0.94
Cytoplasmic	47	55	0.82
Transmembrane Helix	56	76	0.93
Non-Cytoplasmic	77	85	0.86
Transmembrane Helix	86	110	0.85
Cytoplasmic	111	121	0.82
Transmembrane Helix	122	141	0.84
Non-Cytoplasmic	142	160	0.78
Transmembrane Helix	161	185	0.85
Cytoplasmic	186	192	0.79
Transmembrane Helix	193	213	0.87
Non-Cytoplasmic	214	480	0.94
Transmembrane Helix	481	501	0.79
Cytoplasmic	502	517	0.83