YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90325331, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSIPNILS FIRLILIPFF VIAFYLPYEW SAFATALIFF IAGATDWFDG YLARKLNQTT  60
   61 RFGAFIDPVA DKLMVITAMV LVVEHYHSIW VTIPAVTMIG REIIISALRE WMAELGKRAS 120
  121 VAVSWVGKVK TASQMFALLL LLWHPHEWVT WLGYVSLYVA MVLTYWSMYQ YLKAAKGDLL 180
  181 NAEHH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	26	0.91
Non-Cytoplasmic	27	31	0.63
Transmembrane Helix	32	52	0.76
Cytoplasmic	53	68	0.56
Transmembrane Helix	69	83	0.57
Non-Cytoplasmic	84	85	0.50
Transmembrane Helix	86	105	0.64
Cytoplasmic	106	125	0.57
Transmembrane Helix	126	143	0.67
Non-Cytoplasmic	144	149	0.71
Transmembrane Helix	150	169	0.92
Cytoplasmic	170	185	0.90