YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90413332, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTTFADAFY FDSLVWDWII AIYLFLAGMS AGAVMISIYL KRKVIQGHPS TNGIIKATAI  60
   61 LAPFGIIAGL VILIFHLTKP WSFWKIMIFY NTSSVMSMGV MLFQIYMVVL FAWIAIIFKD 120
  121 DLLKLLNGRL PIVDKVMGII SKYENSIELF LGFLAVMLAA YTGFLLSALK TYPLLNNPVL 180
  181 PILFLFSSLS SGAAACLLFG IIGFKESAHS ASVKWIHKFE RPVVVFELFV LFAFFSGLYF 240
  241 GGGQREAAVM AAIGGGFWAS WFWYGVIGLG MLVPLGLNAV SSDGVKHNKA FIMLVTSLSL 300
  301 IGVLMLRTFI LYAGQMTLV

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.94
Transmembrane Helix	19	40	0.95
Cytoplasmic	41	56	0.87
Transmembrane Helix	57	77	0.94
Non-Cytoplasmic	78	94	0.88
Transmembrane Helix	95	117	0.88
Cytoplasmic	118	148	0.92
Transmembrane Helix	149	169	0.92
Non-Cytoplasmic	170	181	0.81
Transmembrane Helix	182	203	0.96
Cytoplasmic	204	222	0.94
Transmembrane Helix	223	242	0.96
Non-Cytoplasmic	243	259	0.85
Transmembrane Helix	260	280	0.91
Cytoplasmic	281	289	0.89
Transmembrane Helix	290	311	0.94
Non-Cytoplasmic	312	319	0.85