YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90413241, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHEPDSQTI TQHTDTTNRL NATGCKRQWQ IFLVALAFFT RIPIPENTPY SSERLNQANR  60
   61 YFGAVGIIVG FLTAIMYWIS VQVFPIELAV AAAIICGLLL TGAFHEDGLA DVFDGFGGGW 120
  121 SVEQKLNIMK DSRLGTYGAS ALVMMLGCKW AVLIALAKID ILLPVGLLIV MHTLSRICAA 180
  181 SLIFSYPYVR ADQDSKVKPL ANQQSQHDLW VLIATGLIIL LVLPLEMAIS LTLVLLVVRW 240
  241 LCGKWFQQQL GGYTGDCLGA AQQITELMGY LTLLAWLS

Type	Start	End	Confidence
Cytoplasmic	1	28	0.88
Transmembrane Helix	29	45	0.49
Non-Cytoplasmic	46	60	0.50
Transmembrane Helix	61	81	0.91
Cytoplasmic	82	85	0.48
Transmembrane Helix	86	106	0.85
Non-Cytoplasmic	107	133	0.55
Transmembrane Helix	134	153	0.88
Cytoplasmic	154	160	0.44
Transmembrane Helix	161	184	0.77
Non-Cytoplasmic	185	208	0.63
Transmembrane Helix	209	238	0.82
Cytoplasmic	239	278	0.55