YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90413174, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	35	0.88
Cytoplasmic	36	55	0.82
Transmembrane Helix	56	75	0.73
Non-Cytoplasmic	76	91	0.54
Transmembrane Helix	92	116	0.74
Cytoplasmic	117	136	0.97
Transmembrane Helix	137	161	0.85
Non-Cytoplasmic	162	177	0.84
Transmembrane Helix	178	197	0.93
Cytoplasmic	198	205	0.77
Transmembrane Helix	206	225	0.94
Non-Cytoplasmic	226	235	0.81
Transmembrane Helix	236	257	0.74
Cytoplasmic	258	299	0.83
Transmembrane Helix	300	320	0.90
Non-Cytoplasmic	321	346	0.85
Transmembrane Helix	347	370	0.87
Cytoplasmic	371	385	0.91
Transmembrane Helix	386	408	0.86
Non-Cytoplasmic	409	415	0.69
Transmembrane Helix	416	435	0.92
Cytoplasmic	436	477	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQINFLND LLWGSVLIYL LVGVGIFFTY RLGFIQFKHF GHMFSVMRNS RKSDKAGISS  60
   61 FQALCTSLAA RVGTGNMAGV AVALTLGGPG AIFWMWLIAM LGMATAFAES ALAQLYKTRD 120
  121 ADGNYRGGPA YYMEKGLGMR WMGVVFSIFL IIAFGLVFNA VQANSISQAM NVAFGFNPTY 180
  181 VGMVLVVMTG IIIFGGLRAI ARTAEILVPA MALCYLLLAL FIMFTNMEKL PGVISLIFRS 240
  241 AFGLEEAASG ALGYTIAQGM INGLKRGLFS NEAGMGSAPN AAASATPYPP HPASQGYVQM 300
  301 LGVFMDTIVI CSATVAIILM SGEYVPHGEV TGIELTQRAL SAQVGSWGSI FIAVAIFFFA 360
  361 FTSLVANYSY AETNLIFLEH NNKAGLNVFR LVVLGMVMFG SIADLPTVWA MADVSMGMMA 420
  421 IINLIAIVLL SGTAVKLAKD YNKQLSQGKV PTFDSKDYPE LHAQLEEGIW DQPKSKE