YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90413136, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAFLVLSIT PLTLSAFFFL NSHTKDLAEQ STNHLASLLD NKQKQLNNFF TARELDVQSF  60
   61 ARSELSNASG GRFYGLVGAF NQLGEIDTLL KGTTNSRYFK ETLTTKNKNF SSDNSASFVG 120
  121 HERYRLMYKR YNWAYEEYLK RSAFSDIMLV DINGNVVYSV FQHNRFGSNL LDDNNPSLAL 180
  181 KETFTKIQAQ AKKHQLEPDV VPVVFTDFSQ DPFTKTYTAW FAAPIIQQGY LHSYVFFKLK 240
  241 NETISNLINN ASSNTNFVQT LLIGPDHKSR ITDGESIPTI LTSQKIDAAL AGESGVGSFN 300
  301 NYNNVSVLSA FSQINVMGTT WALLVELPEK EAFARIHQLE KLFFFAMLTA IVLVFITSHW 360
  361 LSNSITAPLL RLTWAAERAS AGDLEQEIKG TERSDEIGRL AISFARMQRS IREKITLIRD 420
  421 QNNELEQNLK VISQQNENLQ AADKLKDEFL ATTSHELRTP LHGMVGIAES LLAGANGPVQ 480
  481 KSQRRQLEMI INSGQRLTNL VDDLLDYHKM RYGDLDINKH AVNLPSAVRL VLELSSHLLG 540
  541 SKPVRIINQI PNDLPLVLAD EQRLEQILYN LVGNAIKYTS EGKIILSSTV LESQIRIQVV 600
  601 DTGQGIPAEQ LEHIFEPLIQ ANTGLANYRQ GAGLGLSISR QLIDLMGGHL YVSSQPMVGT 660
  661 TFSFTLNLAS DEDIVASQQS TNGQIHFQAP SSETTTCENE NLPENPDGEL LLVVDDEPVN 720
  721 LQVLNNFLRL EGYRVLTADS GPQALKIIEQ QQPALILLDI MMPEMSGYEV CHILREEHSL 780
  781 IELPIIMLSA LGQVQDRIKG FESGANDYLT KPFNKEELIA RISAHLQAGK TEVQRQKNAA 840
  841 LQQEIHRREQ VEVGLLTTQS RLLGLLESTN EAILCVQNEG RIRYANSAAG KLFKRSPEQL 900
  901 ERYNIEDILV THLPNDISQS HHFNGSLTFR IGDILKPLDT DVINLPEESG LKRMFVFDNE 960
  961 GPSAQHRISM LEDAIDVLSS FAFDGDKHNL QQLRELGGEF TRLADKLGDN GKNKADMVRE1020
 1021 LLVEVMKATL KYWETASQKT KFELAEESGL WRVYLDRSTL QTRTLDKYLH VETLPKTPRW1080
 1081 RTVINTIDFV LERCTDSSIE RHEVQTMRDK LQHIISQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle