YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90412848, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSATAPTNN NFTPKEMMKQ AEKYAVGKAS KPTRTTIALA ITAGVFIGLA FVFYITVTTG  60
   61 NGGVSWGLNR FYGGLAFSLG LILVVICGGE LFTSTVLSSI ARANNHISSG RMLGTWAKVY 120
  121 FGNFLGAMLL LLLVSMASLY QLDGGQWGLN ALNIAQHKLH HQPLEAFSLG VLCNLLVCLA 180
  181 IWMTFCTENM MTKMVIMILP VAMFVSTGFE HSVANMFMVP LGITIQNFAP ESFWLNLGVL 240
  241 PEQYSDLTIQ NFIFANLIPV TLGNIVGGGV LVGLSYWAIF SSPKEQHASA TIITPDFSNT 300
  301 HTLNMEHTML NEKQFVNDHM RPATITLLPG MPVAQALDIL MNEDLTGAPV MTTDQRLVGF 360
  361 FSIHDALVDL WCNDYMPDAE SKVQDLMKHE IQTVSPDNSI LEIAEYMSID KNILYPVSDG 420
  421 GIATRFTSLS LNERARAMVI NRPHSFPVVK DEQLVGIITR KEIVSALRPV YGNIVSVTDV 480
  481 ANTQPKAVSE IA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	57	0.93
Non-Cytoplasmic	58	74	0.88
Transmembrane Helix	75	98	0.90
Cytoplasmic	99	118	0.90
Transmembrane Helix	119	140	0.94
Non-Cytoplasmic	141	165	0.91
Transmembrane Helix	166	186	0.94
Cytoplasmic	187	194	0.84
Transmembrane Helix	195	214	0.87
Non-Cytoplasmic	215	256	0.79
Transmembrane Helix	257	280	0.88
Cytoplasmic	281	492	0.86