YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90326328, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQRLGTEMA NKFDVVIIGA GAAGLMCAAE AGKRGRSVLV VDHAKKPGRK ILISGGGRCN  60
   61 FTNYDVTASN FVCRNPHFAK SALSQYSQWD FIAMIAKHSI AYEERSHGQL FCEDSAKEIV 120
  121 QMLLAECDLP TVEQRYRCDV HDITKTDTGF SLKLNTDTVE CESLVIATGG LSMPKLGATP 180
  181 FGYQVAEQFG LKVVPTTAGL VPFTLHKEEK EAFAELSGIA VPVTIEAEDG TYFKESLLFT 240
  241 HRGLSGPVIL QISSYWTPGQ KVTINLLPDV SLSDTLRAMR ASNPNQSLKT ALSRLLPKRL 300
  301 IEVLIERGDI TDKPLKQYNE KEVASLDTYF HSWSIAPNGT EGYRTAEVTL GGVDTDELSS 360
  361 KTMEVKLVPG LYFAGEVMDV SGWLGGYNFQ WAWSSGYVAG QYA

Type	Start	End	Confidence
Signal Peptide	1	31	0.49
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	403	0.97