YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90327377, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILAWFDIN NTLVNIPIGG GYAMSWIEAV GTVFGLLCIW YASQEKTINY VFGLINVSLF  60
   61 AIIFFQIQLY GILMLQLFFF CANIYGWYAW TRPSSEAGEM LEVRWLNKQK MAFTAAVSVA 120
  121 AIAIMTVFID PIFFALANIS VDVLNTFGAD LARPELSPDA FPFWDSVMTV LSIVAQILMT 180
  181 RKYVENWMLW VVINMISVCI YAAQGVYALS IEYAILLFIA ANGTRQWMNT AKQNQQSKQH 240
  241 DLAAEVKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	41	0.88
Cytoplasmic	42	47	0.85
Transmembrane Helix	48	67	0.91
Non-Cytoplasmic	68	71	0.79
Transmembrane Helix	72	91	0.94
Cytoplasmic	92	110	0.97
Transmembrane Helix	111	134	0.91
Non-Cytoplasmic	135	160	0.91
Transmembrane Helix	161	180	0.90
Cytoplasmic	181	186	0.87
Transmembrane Helix	187	208	0.85
Non-Cytoplasmic	209	248	0.66