YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90411609, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.89
Transmembrane Helix	277	300	0.81
Non-Cytoplasmic	301	328	0.52
Transmembrane Helix	329	346	0.58
Cytoplasmic	347	347	0.21
Transmembrane Helix	348	371	0.75
Non-Cytoplasmic	372	391	0.57
Transmembrane Helix	392	410	0.69
Cytoplasmic	411	422	0.85
Transmembrane Helix	423	446	0.87
Non-Cytoplasmic	447	453	0.91
Transmembrane Helix	454	476	0.93
Cytoplasmic	477	509	0.97
Transmembrane Helix	510	531	0.88
Non-Cytoplasmic	532	661	0.96
Transmembrane Helix	662	686	0.81
Cytoplasmic	687	692	0.92
Transmembrane Helix	693	716	0.88
Non-Cytoplasmic	717	724	0.83
Transmembrane Helix	725	745	0.92
Cytoplasmic	746	757	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYNILTVGN PNSGKTTLFN GLTGAKQQVG NWAGVTVEKK TGNYQCAGDH FALTDLPGIY  60
   61 NLDSANDANS LDEAIASRAI LTTPADVIIN VVDASCLERS LYMTLQLREL GRPMVVVLNK 120
  121 MDVLQRQRQV LDVKALEKML GCPVLCLSAN NLKQVEAFKT SLHKMLAQGV AVGDMLLDYG 180
  181 KNFESAIAEL ESLFSNDQLN ARSQAIRVLE NDTLVINGLS ETDKSKACNI RNKLLVEVDP 240
  241 DIQVADVRYT YLHQLCQKVR RQEGKLSRSI SDKIDAVLLH RAFGIPFFFV VMYLMFMFSI 300
  301 NIGSAFIDFF DISVGAILVD GGHYLLDGHL PVWLVTVIAD GVGGGVQTVA TFIPVIACLY 360
  361 LFLAVLESSG YMARAAFVLD KVMQKVGLPG KAFVPLVLGF GCNVPSIMAT RTLEQERERK 420
  421 LAAAMAPFMS CGARLPVYAL FAAAFFPNNG QNVVFGLYVL GIFAAVMTGV VLRYTLYPGK 480
  481 SDSFIMEMPD YEFPTMRNVG IKTWQKLKRF VFGAGKTIVV VVACLSFFNS LGTDGTFGNE 540
  541 DSENSVLSRA AQIVTPVLSP IGVKEDNWPA TVGIITGIFA KEAVVGTLNS LYAPSVDEDA 600
  601 EYDLFGSLQE AVASIPANLA DLSYSDPLGI TVGELDDLST AAEEQEVDQS IFGNIQAHFV 660
  661 SSAAAMSYLI FILLYTPCAA AMGAYVREFG QKFSVFIAGW TMLLAYTFAT IFYQVAHFTD 720
  721 HPVSSMGWIA FFVLINVGLF IVFKYQGQKQ QKELALL