YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90327975, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFSAIPVF VAVVECGSFS LAGEKLGVTK SAVSKRISQL EAKLGIQLLQ RTTRRLSLTE  60
   61 AGEQYFDYAR NALTIANEGE DAISMLQEQP QGTLRLNVPM VFGRLHIAPM IPKFLQDNPK 120
  121 IKVEMMMDDK VVDLISGSFD IAIRIGKLPD SSLIAKRIAP CHSVLCASPD YLKKHGTPST 180
  181 PLDLAHHNCL SYSYFQAGSE WRFNGPEGQI SVVPKGNYCV NNSDALFEGL LTGLGVCQMP 240
  241 TFIVASAIEQ GNLISLIPEY ELPKHAIYAM LPERKHIPAK ISIFLAYLKN YIDEKSASWD 300
  301 LNQSL

Type	Start	End	Confidence
Signal Peptide	1	22	0.51
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	305	0.98