YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90412010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	52	0.90
Transmembrane Helix	53	74	0.91
Cytoplasmic	75	84	0.87
Transmembrane Helix	85	106	0.91
Non-Cytoplasmic	107	135	0.92
Transmembrane Helix	136	157	0.90
Cytoplasmic	158	190	0.93
Transmembrane Helix	191	214	0.79
Non-Cytoplasmic	215	236	0.86
Transmembrane Helix	237	256	0.93
Cytoplasmic	257	287	0.97
Transmembrane Helix	288	311	0.89
Non-Cytoplasmic	312	330	0.85
Transmembrane Helix	331	352	0.92
Cytoplasmic	353	367	0.89
Transmembrane Helix	368	390	0.87
Non-Cytoplasmic	391	407	0.90
Transmembrane Helix	408	428	0.91
Cytoplasmic	429	465	0.92
Transmembrane Helix	466	483	0.86
Non-Cytoplasmic	484	515	0.83
Transmembrane Helix	516	534	0.97
Cytoplasmic	535	542	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKHIFWQS SSWVLSLLLV LPILAIFYTA LGDSDEVFSH LMSTVMGTYA ANTVWLVLGT  60
   61 SVLALLLGLP SAWIMAMCRI PGEKILQWAL VLPLAMPGYI VGYIYTNWFD YAGPVQIFLR 120
  121 DVFGWETIHD YWFPNIRSLG GACVVLALVL YPYIYLLARA AFMEQSVSLL QSARLLRCSP 180
  181 WQSFRRISLP LARPSIAVAL SLVAMETLGD FGTVSYFAVN TLTTAVYDTW LGYSNLNAAA 240
  241 KISSLMLLVI FFLISTERFS RRKQKLFQQQ FEHGDDVRYT LTGAKKWCAI IWCWGLVCMA 300
  301 FAFPLLQLCY YAWHYFAESW TSQFLQYSLN SLSVSIIAAV VAVILALIVN FYRRLDGSKY 360
  361 TAVPMRLASM GYAVPGTVLA IGVIIPLTSV DHLVNDLARS YELGRPGLIF SGTMFAIIFA 420
  421 FVVRFAAVAI GSIESSLAKI SPSLDMASKT MGYASTAMLR RVHLPLIRRG CLIAGLLVFI 480
  481 ESMKELNAAL LLRPFNFETL ATYVFNFASD EQLEQAALPA ILLVIVGLIP LVMINRSLEQ 540
  541 KH