YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90411987, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFTYYPWL FPVFAAIFGL LIGSFLNVVI HRLPIMMEHQ WKADCIECFP EFDNEKKNEK  60
   61 DNNPATTTAV FNLSVPRSRC PHCQHAITMW ENIPVISWLV LKGKCSGCGV KISARYPAIE 120
  121 LLTAVMTTII ALILPPSLWA VAVIFFSFAL IALTFIDIDT MLLPDQITLP LMWAGIAAAL 180
  181 VGLSPVSLQD AIIGAMVGYL SLWSLFWCFK LITGKEGMGY GDFKLLAALG AWLGWQSLPF 240
  241 VVLLSSLVGA VCGIILLRVQ RSDSQTPFSF GPYLAMAGWI SILWGDQIIG WYLHSYIGM

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.92
Cytoplasmic	31	121	0.93
Transmembrane Helix	122	156	0.75
Non-Cytoplasmic	157	166	0.55
Transmembrane Helix	167	186	0.87
Cytoplasmic	187	191	0.51
Transmembrane Helix	192	213	0.78
Non-Cytoplasmic	214	234	0.75
Transmembrane Helix	235	257	0.90
Cytoplasmic	258	268	0.72
Transmembrane Helix	269	290	0.86
Non-Cytoplasmic	291	299	0.75