YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90328264, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWLHPYAK AENCYRLCGK LLPWFSIIAF SSLIVGSIWG LMFAPTDYQQ GDSFRIIYLH  60
   61 VPAAMLSMGA YLSMAIAAFI GLVWQVKMSD MAAAAMAPIG AIFTFIALLT GAIWGKPMWG 120
  121 AWWVWDARLT SELILLFLYL GVIALYSAFD DQKTAAKAAG ILAIVGVINL PIIHYSVEWW 180
  181 NTLHQGATIS KFEKPSMDSS MLWPLLINVI GFGCFFGAVT LVRLRNEIIA RESHRPWVRN 240
  241 LVK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.95
Non-Cytoplasmic	44	60	0.90
Transmembrane Helix	61	84	0.90
Cytoplasmic	85	92	0.85
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	128	0.83
Transmembrane Helix	129	149	0.90
Cytoplasmic	150	157	0.80
Transmembrane Helix	158	177	0.93
Non-Cytoplasmic	178	201	0.96
Transmembrane Helix	202	224	0.91
Cytoplasmic	225	243	0.97