YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90411035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYPSALILD WLANYFWPFT RISSMMMTMT FFGARFVSPR IRLYLGLTVT FAVMPSLPAV  60
   61 PANIELLSLQ GFLITAQQIV IGVSIGLVTQ FVTQTFVLVG QILGMQSSLG FASMVDPANG 120
  121 QNTPVLGQLY LFLAIMLFLA TDGHLEMLNV IVLSFKTLPI GQEMFRPDDY YQLAGWFGHM 180
  181 FKGALNMALA GVIALLTVNL SFGVMTRAAP QLNIFALGFS FALLLGLLIS WYLVMGMLPQ 240
  241 YQHAWDFGFQ QICSLIRVDC

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.87
Transmembrane Helix	15	34	0.88
Cytoplasmic	35	42	0.70
Transmembrane Helix	43	62	0.90
Non-Cytoplasmic	63	78	0.70
Transmembrane Helix	79	104	0.76
Cytoplasmic	105	124	0.69
Transmembrane Helix	125	145	0.84
Non-Cytoplasmic	146	182	0.85
Transmembrane Helix	183	204	0.91
Cytoplasmic	205	213	0.75
Transmembrane Helix	214	235	0.94
Non-Cytoplasmic	236	260	0.88