YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90328441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLNTFSKS RISWLLLLLC IVFFEGSALF FQHGMKLEPC VMCIYERVAM MGIAFAALLG  60
   61 AIAPQYAIIR WAGLIAWGYS AIRGLQLSIE HVGYQFNPSP FATCDLFVQF PSWAPLNKWV 120
  121 PWMFEAYGDC AKVVWTFLGQ SMPQWLVIIF AGNLVALALI VIAQFFSKKT NTIRDM

Type	Start	End	Confidence
Cytoplasmic	1	11	0.64
Transmembrane Helix	12	33	0.90
Non-Cytoplasmic	34	47	0.56
Transmembrane Helix	48	74	0.78
Cytoplasmic	75	92	0.42
Transmembrane Helix	93	113	0.38
Non-Cytoplasmic	114	144	0.88
Transmembrane Helix	145	166	0.95
Cytoplasmic	167	176	0.90