YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90410488, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.82
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	251	0.88
Transmembrane Helix	252	272	0.92
Cytoplasmic	273	282	0.72
Transmembrane Helix	283	307	0.89
Non-Cytoplasmic	308	321	0.73
Transmembrane Helix	322	344	0.89
Cytoplasmic	345	364	0.78
Transmembrane Helix	365	386	0.93
Non-Cytoplasmic	387	402	0.74
Transmembrane Helix	403	424	0.86
Cytoplasmic	425	441	0.58
Transmembrane Helix	442	466	0.77
Non-Cytoplasmic	467	477	0.78
Transmembrane Helix	478	499	0.78
Cytoplasmic	500	505	0.80
Transmembrane Helix	506	527	0.90
Non-Cytoplasmic	528	545	0.73
Transmembrane Helix	546	567	0.90
Cytoplasmic	568	578	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIVTACP SGIANSVIAA GLLEKAVAEL KWNADIECQS TVTAATSLTT EQIKAADYIV  60
   61 IAASTAVDTS RFAGKKVYQS AVSACFSDPK AYLETAIDKA AVLSASELSA EAAVSHTSGK 120
  121 KKIVAITACP TGVAHTFMAA EALEQEGQRQ GYDIKVETRG SVGAKNQLTN EEIAAADLVI 180
  181 IAADIEVDLA RFDGKKLYKT STGLALKKTK QEMDKAFASA SVYKHEAGSA SSSDQTQEKA 240
  241 GAYKHLMTGV SHMLPLVVAG GLSIALSFVF GIEAFKEEGT LAAALMTIGG GSAFALMVPV 300
  301 LAGFIAFSIA DRPGLAPGLI GGMLASSTGA GFLGGIVAGF LAGYSAKFLA DKVKLPQSME 360
  361 ALKPILIIPL VASLITGLIM IYVVGGPVAA AMTGLTEFLN NMGSANAVLL GIILGCMMCF 420
  421 DLGGPVNKAA YTFGVGLLAS QTYAPMAAVM AAGMVPAMGM GLATFLAKRK FNSSESEAGK 480
  481 ASFVLGLCFI SEGAIPFAAR DPMRVIPCCM AGGALTGALS MLFGAKLMAP HGGLFVLLIP 540
  541 NAISPALLYL VAIAAGTLVT GISYALLKKS DQEQLAAA