YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90329084, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFTPPTFK KAFLHPRYWP TLMMISILYL ISWLPYFIQF RMGQGVGWLA FRLASRRRET  60
   61 VKRNLELCFP DMSEPERDAL IHKNQENTGL ALFETGMAWF WPDLRVQRHV EVEGIEHIKK 120
  121 LQAEGKGVLL IAIHSMNLEL GARAFGLSTP GVGVYRPNNN PCFDYFQYKG RSRSNKDMID 180
  181 RKDVKGMLRA LRKGELVWYA PDHDYGRRRS TFAPLFAVEN ACTTTGTSLL VDASGCAAVP 240
  241 FAMIRNSDSG KYTLKIFPPL DAFPHKDLDA AAAYVNKAVE RSIMEAPEQY LWLHRRFKTR 300
  301 PEGEPSLYK

Type	Start	End	Confidence
Cytoplasmic	1	17	0.85
Transmembrane Helix	18	37	0.91
Non-Cytoplasmic	38	309	0.85