YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90409595, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	34	0.88
Non-Cytoplasmic	35	54	0.92
Transmembrane Helix	55	76	0.91
Cytoplasmic	77	86	0.84
Transmembrane Helix	87	108	0.90
Non-Cytoplasmic	109	113	0.76
Transmembrane Helix	114	132	0.91
Cytoplasmic	133	139	0.80
Transmembrane Helix	140	163	0.90
Non-Cytoplasmic	164	171	0.81
Transmembrane Helix	172	194	0.93
Cytoplasmic	195	211	0.79
Transmembrane Helix	212	235	0.85
Non-Cytoplasmic	236	240	0.64
Transmembrane Helix	241	259	0.77
Cytoplasmic	260	308	0.79
Transmembrane Helix	309	328	0.93
Non-Cytoplasmic	329	338	0.65
Transmembrane Helix	339	361	0.87
Cytoplasmic	362	368	0.63
Transmembrane Helix	369	387	0.90
Non-Cytoplasmic	388	401	0.46
Transmembrane Helix	402	421	0.76
Cytoplasmic	422	429	0.55
Transmembrane Helix	430	451	0.87
Non-Cytoplasmic	452	467	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFALFGLL FFCMFIGMPI AIALGLSSVA TILLFSNDSL ASIALKLFEA TSEHYTLLAI  60
   61 PFFILSSAFL STGGVAKRLI NFAIDAVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG 120
  121 SIVIVGMVKA GYPKSFAAGV IANAGTLGIL IPPSIVMLVY AAATEVSASR MFMAGFIPGL 180
  181 MMGGILMIAI YIVARIKGLP SQPFPGFSSL LISGLKALGG LMLIVIVLGS IYGGIASPTE 240
  241 AASVAAVYAW CVSVWGYRDI GPLKGVPWRY EHEHVVKAIV RNTASFPLAL IRSFTDKEVS 300
  301 HVVKDAAKVS IMLLFIIANA MLFAHVLTTE RIPHMIAETI VSMGLPAWGF LIVVNILLLI 360
  361 AGNFMEPSAI LLIMAPILFP IAVQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT 420
  421 GESMGWAIRA ALPWLGLLLI FLMLITYIPQ ISLFLPEYID SLRVPIK