YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90310014, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQEVEDYGL SKVKKSTAKS FSLAVFAGAF IAIAFVFYIT VTTGAQSAPW GLVRVAGGIA  60
   61 FSLGLILVVL CGGELFTSTV LSTVAWAEGL VSTKKLLGCW ARVYFGNMLG AAIMLLLVFS 120
  121 AKMYFLDGGQ WGLNALLIAQ HKLQHTWIQA FSLGILCNIL VCLGIWMTFS TKDILAKSML 180
  181 LILPVAMFVG SGFEHSIANM FMVPLGIMIQ NFSEPAFFIS NNISSTQFAD LNWSNFLLHN 240
  241 LIPVTLGNIV GGGVLIGLAY WVIDKSSEPK KSELVRENTH ENRHVEMHAE QKNTQKTLND 300
  301 FLVKDLMQSN PLTLTEQQTI YQALSFIVDN KISSAPVLDE NKQLVGFISE QDILRVLWSK 360
  361 QYSNTLNDRV TDVMQTEMLT VDAMQPVSSL LEFMVVDKEK LFALNEPKAL GDTHYQNYEQ 420
  421 RLKSATVQRP SSYAVLHEGL FCGVITRQDV AKQLCLQYKN NATNNVV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.96
Non-Cytoplasmic	42	58	0.77
Transmembrane Helix	59	82	0.85
Cytoplasmic	83	102	0.84
Transmembrane Helix	103	125	0.91
Non-Cytoplasmic	126	146	0.94
Transmembrane Helix	147	169	0.93
Cytoplasmic	170	178	0.84
Transmembrane Helix	179	198	0.91
Non-Cytoplasmic	199	240	0.88
Transmembrane Helix	241	263	0.93
Cytoplasmic	264	467	0.96