YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90205974, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.98
Transmembrane Helix	71	92	0.90
Non-Cytoplasmic	93	105	0.85
Transmembrane Helix	106	126	0.92
Cytoplasmic	127	135	0.83
Transmembrane Helix	136	155	0.93
Non-Cytoplasmic	156	161	0.73
Transmembrane Helix	162	184	0.85
Cytoplasmic	185	194	0.80
Transmembrane Helix	195	217	0.89
Non-Cytoplasmic	218	224	0.78
Transmembrane Helix	225	245	0.96
Cytoplasmic	246	255	0.85
Transmembrane Helix	256	276	0.93
Non-Cytoplasmic	277	283	0.89
Transmembrane Helix	284	305	0.93
Cytoplasmic	306	324	0.92
Transmembrane Helix	325	348	0.89
Non-Cytoplasmic	349	359	0.78
Transmembrane Helix	360	379	0.94
Cytoplasmic	380	388	0.82
Transmembrane Helix	389	407	0.95
Non-Cytoplasmic	408	417	0.72
Transmembrane Helix	418	437	0.92
Cytoplasmic	438	457	0.86
Transmembrane Helix	458	481	0.77
Non-Cytoplasmic	482	512	0.85
Transmembrane Helix	513	534	0.95
Cytoplasmic	535	681	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIATLHPPQ CLVRPSPNLH DGARARLRTC RDHRRTVASG RTVLLPIDFW LNPTMFETVT  60
   61 ARVRGADPWP ALWALLIGFF MILVDATIVP VANPAIMAQL GADYDAVIWV TSAYLLAYAV 120
  121 PLLVSGRLGD RYGPKTVYLV GLAVFTAASL WCGLSDSIGM LVAARVLQGV GAALLTPQTL 180
  181 TVITRTFPAH NRGVAMSVWG ATAGVATLAG PLAGGVLVDS LGWQWIFIVN LPVGVLGFAL 240
  241 AVWLVPSLPT ARAQRFDLPG VVLSGVALFL IVFALQEGQS HDWAPWIWAT IGIGIAVMAA 300
  301 FLYWQSVNTG EPLIPLIIFG DRNFSMSNLG VATIGFVATG MILPLMFYAQ SVCGLTPTQA 360
  361 ALLTAPMAVA TGVLAPLVGK LVDRSHPRPV VGFGFALMAI GLTWLSIEMT PSTPIWRLVV 420
  421 PLTAMGVAMA FIWSPLAATA TRNLPPQLAG AGSGVYNTTR QVGSVLGSAA MAALLASQLS 480
  481 AKIPGEAPVP VEGQAGQLPA FLHAPFAAAM SQAMLLPAFV ALFGVIAALF LVGLGDRLPA 540
  541 PPRRPQETAE PVPAFDPDDE LYWADGEDEY VEYEVPWDDG AEPRRPAQEA DTVDAAADTD 600
  601 VLDPVTEPMH DGGGYPAPES APRRDHADPT SHPDREWRSI LDQLLDPPKP SDDPTGQGRN 660
  661 GFHVTPSEDG RGASRGRHSL D