YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120405434, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSFRALPPS LVRQASKSRT AGQPNPPIPD ARRIHVPVSQ AMVDCGVYCE GQRLPGKYTH  60
   61 AAALAKVHEL EADGRKAFVW IGLHEPDEHQ MQTVADVFGL HQLAVEDAVH AHQRPKLERY 120
  121 DKMLFLVLKT VTYVEHDSIA KVREIVETGE IMIFVGSDYV VTVRHGEHGG LAGVRKRLEA 180
  181 SPANLQLGPY SVMHAIADHV VDTYLDVTDL IKTDIDAMEE EIFSPLTATN IESIYLLKRE 240
  241 VVELRRAVGP LATDLQRIGA DHDDLINVEI RRYMRDVHDH TIKASERIAS YDELLSSLVQ 300
  301 AALGKVAMQQ NVDMRKISAW VAIAAVPTAM AGIYGMNFDH MPELHWTFGY PAVLMVMISV 360
  361 CLLLYRNFRR NNWL

Type	Start	End	Confidence
Cytoplasmic	1	316	0.97
Transmembrane Helix	317	336	0.95
Non-Cytoplasmic	337	345	0.81
Transmembrane Helix	346	365	0.95
Cytoplasmic	366	374	0.82