YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120406780, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	163	0.73
Transmembrane Helix	164	189	0.89
Cytoplasmic	190	207	0.77
Transmembrane Helix	208	230	0.91
Non-Cytoplasmic	231	236	0.73
Transmembrane Helix	237	259	0.86
Cytoplasmic	260	272	0.75
Transmembrane Helix	273	296	0.89
Non-Cytoplasmic	297	315	0.82
Transmembrane Helix	316	334	0.95
Cytoplasmic	335	341	0.67
Transmembrane Helix	342	360	0.87
Non-Cytoplasmic	361	366	0.66
Transmembrane Helix	367	386	0.92
Cytoplasmic	387	392	0.87
Transmembrane Helix	393	415	0.90
Non-Cytoplasmic	416	426	0.80
Transmembrane Helix	427	449	0.89
Cytoplasmic	450	529	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDRSDGMA RRRRALHFAL KGRRDPASGA GQRRRTSGRL SERHTRKVLD LTIRLAEVML  60
   61 SSGSGTADVV ATAQDVAQAY QLTDCVVDVF VTTIFVSALP TADSPPVTIV RAVQARSTDY 120
  121 TRLADLDRLV RRITSGGVSV DEAHEAMDEL SEQPHPYPRW IATAGWAGFA LGIAMLLGGT 180
  181 WLTCILAAGT SVLIDRSGRL LNRVGTPMFF QQAAGASIAT LVAVAAFLFA GQGPTTLVAT 240
  241 GIVMLLAGMT LVGSVQDALT GYMLTAVARL GDVLFLTLGI VVGILAGLQI AALAGIQIQL 300
  301 RVDATEYFVV PTTPRQIVVA VSGAALAGAC LVIASYAKWR SVLTAGVAAG LAEAVLIGLG 360
  361 RAGVGQVVAT GTAAVGVGLL ATLISIRRQA PALVTATAGI TPMLPGMAVF RAVFYFAVER 420
  421 DFAAGMAQAL AAAATALAIG AGVVMGELAG SPLRYRAGRI SDFLRVEGPP GLRRAVGNVV 480
  481 ALRPAADQQS SRSPHQRSWS VALEPELSEV ATEANGEDPA PERDATGER