YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119958313, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGWEIFWDV VPYVTLAIVV VGTWWRYRYD KFGWTTRSSQ LYESRLLRVA SPMFHFGILV  60
   61 VIVGHIIGLV IPESWTDAIG LSDHAYHIQA LVLGAIAGVC TLVGISLLVY RRRTTGPVFM 120
  121 ATTVNDKVMY LVLVMAIVAG LACTLIGATP VGAEHNYRET VSPWFRSIWV LQPRGDLMVD 180
  181 APLWFHIHVM LGLTLFCLWP FTRLVHAFSA PIGYLFRPYI VYRSREAAGK GELVGSAPRR 240
  241 RGW

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.97
Transmembrane Helix	6	27	0.88
Cytoplasmic	28	45	0.96
Transmembrane Helix	46	69	0.87
Non-Cytoplasmic	70	86	0.89
Transmembrane Helix	87	110	0.92
Cytoplasmic	111	127	0.98
Transmembrane Helix	128	149	0.93
Non-Cytoplasmic	150	183	0.92
Transmembrane Helix	184	202	0.92
Cytoplasmic	203	243	0.92