YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90202214, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNQARKRSG LGRGLASLIP TGPAEGGEPA TLGPKMGAAA ADVVLGGAPV APPASTDVNP  60
   61 VGAVYREIAP SQIDPNPRQP RQVFDEEALA ELVHSIREFG LMQPIVVRAT PGGEGESSDR 120
  121 YQLVMGERRW RAAQLAGVAT IPAIVRETAD DSMLRDALLE NIHRVQLNPL EEAAAYQQLL 180
  181 EEFDVTHNEL ATRIGRSRPV ITNMIRLLRL PIAVQRRVAA GVLSAGHARA LLSLEAGPEA 240
  241 QEELAARIVA EGLSVRATEE AVTLANRNGE APPTAPRRKP IQMPGLQDVA EQLSTAFDTR 300
  301 VTVSLGKRKG KIVVEFGSVD DLQRIVELMN ASQP

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	334	0.99