YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89348412, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAVIAGVG AGCRIVGAVA LRAVGHRIVA VDRLRRGSHG TQGKAAGDAE RDPRAAVVII  60
   61 APAPARPVPA PTGTPRTRTP RARRRAPARM TPARPARTPA GTSRTPARAN RTRTKARMIA 120
  121 THIAGADGTG PHITRAAIAR PNHARATAVA GTTHSHAAAT IRPAAVGDGV HGRGAVLHVC 180
  181 VHETEPQRLR AGGRSGKREH ATSDDRGREQ CHSFRSEHDA HSLNAIQARR NLCRLFRRTF 240
  241 GNLRLQRGEV VAVAQIRTAR VQACVTMHYT NSLAPQHPLA ATAPAGACLS RHPPVTTAAF 300
  301 EPAGEQGLPR WLISLNSNKR LSVPRRKAWR THATESQMPK MKTKSGAKKR FRLTGTGKVI 360
  361 AGQAGKRHGM IKRTNSQIRN QRGTTILAEC DGRIIRKSFL PNG

Type	Start	End	Confidence
Signal Peptide	1	18	0.63
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	403	0.96