YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89343035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSFRPLPPR QSSDTRSAGG AAHRIHLPVS QAMVDCGVYC DGIRLPGKYT HAAALDKVHE  60
   61 IEADGGSAFV WIGLHEPDDQ QMKAVAEVFG LHDLAVEDAV HAHQRPKLER YDGTLFLVLK 120
  121 TVTYVEHESM AKVREIVETG EVMIFVGSDF VVTVRHGEHG GLAGVRKRLE AAPHNLRLGP 180
  181 YSVMHAIADH VVDTYLDVTD LIEHDIDAME EDIFSPRQQT DIETIYLLKR EVVELRRAVS 240
  241 PLVTDLERID REHDDLVNVE IRRYMRDVLD HTIKAADRIG SYDELLSSLV QAALGKVAMQ 300
  301 QNVDMRKISA WVAIAAVPTA MAGIYGMNFD HMPELNWTFG YPLALLVMAT VCVVLYRNFR 360
  361 RNNWL

Type	Start	End	Confidence
Cytoplasmic	1	307	0.98
Transmembrane Helix	308	329	0.91
Non-Cytoplasmic	330	336	0.93
Transmembrane Helix	337	359	0.89
Cytoplasmic	360	365	0.96