YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89342252, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPLPPLVE PAAELTKEEV ARYSRHLIIP DLGLDGQKRL KNARVLVIGA GGLGSPTLLY  60
   61 LAAAGVGTIG IVEFDVVDES NLQRQIIHGQ SDIGRPKAQS AKDSVLEVNP LVTVNLHEFR 120
  121 LEPDNAVELF EQYDLILDGT DNFATRYLVN DAAVLAGKPY VWGSIYRFEG QVSIFWEDAP 180
  181 NGLGLNYRDL YPEPPPPGMV PSCAEGGVLG ILCASIASVM GTEAIKLITG IGDPLLGRLM 240
  241 VYDALDMSYR TIKIRKDPST PKITELIDYE AFCGVVSDAA AEAAADSTIT PRELRELLDS 300
  301 GKPLALIDVR EPVEWDINRI EGAELIPKGG FESGEALSKL DNDRTPVFYC KTGIRSAEVL 360
  361 AIVKKAGFAD AMHVQGGIVA WGKQLEPDMV MY

Type	Start	End	Confidence
Cytoplasmic	1	44	0.77
Transmembrane Helix	45	67	0.69
Non-Cytoplasmic	68	392	0.91